ONTOLOGY SOURCE REFERENCE
Term Source Name	UO	OBI	NCBITAXON	OMIM	HP	ORPHA
Term Source File	http://data.bioontology.org/ontologies/UO	http://data.bioontology.org/ontologies/OBI	http://data.bioontology.org/ontologies/NCBITAXON	http://data.bioontology.org/ontologies/OMIM	http://data.bioontology.org/ontologies/HP	http://data.bioontology.org/ontologies/ORDO
Term Source Version	48	35	10	12	570	2.8
Term Source Description	Units of Measurement Ontology	Ontology for Biomedical Investigations	National Center for Biotechnology Information (NCBI) Organismal Classification	Online Mendelian Inheritance in Man	Human Phenotype Ontology	Orphanet Rare Disease Ontology
INVESTIGATION
Investigation Identifier	""
Investigation Title	{{cookiecutter.investigation_title}}
Investigation Description	""
Investigation Submission Date	""
Investigation Public Release Date	""
Comment[Created With Configuration]	bih_cancer
Comment[Last Opened With Configuration]	bih_cancer
INVESTIGATION PUBLICATIONS
Investigation PubMed ID
Investigation Publication DOI
Investigation Publication Author List
Investigation Publication Title
Investigation Publication Status
Investigation Publication Status Term Accession Number
Investigation Publication Status Term Source REF
INVESTIGATION CONTACTS
Investigation Person Last Name
Investigation Person First Name
Investigation Person Mid Initials
Investigation Person Email
Investigation Person Phone
Investigation Person Fax
Investigation Person Address
Investigation Person Affiliation
Investigation Person Roles
Investigation Person Roles Term Accession Number
Investigation Person Roles Term Source REF
STUDY
Study Identifier	{{cookiecutter.s_file_name}}
Study Title	{{cookiecutter.investigation_title}}
Study Description	""
Comment[Study Grant Number]	""
Comment[Study Funding Agency]	""
Study Submission Date	""
Study Public Release Date	""
Study File Name	s_{{cookiecutter.s_file_name}}.txt
STUDY DESIGN DESCRIPTORS
Study Design Type
Study Design Type Term Accession Number
Study Design Type Term Source REF
STUDY PUBLICATIONS
Study PubMed ID
Study Publication DOI
Study Publication Author List
Study Publication Title
Study Publication Status
Study Publication Status Term Accession Number
Study Publication Status Term Source REF
STUDY FACTORS
Study Factor Name
Study Factor Type
Study Factor Type Term Accession Number
Study Factor Type Term Source REF
STUDY ASSAYS
Study Assay File Name	a_{{cookiecutter.assay_prefix}}_{{cookiecutter.assay_name}}.txt
Study Assay Measurement Type	{{cookiecutter.a_measurement_type}}
Study Assay Measurement Type Term Accession Number	http://purl.obolibrary.org/obo/OBI_0000424
Study Assay Measurement Type Term Source REF	OBI
Study Assay Technology Type	{{cookiecutter.a_technology_type}}
Study Assay Technology Type Term Accession Number	http://purl.obolibrary.org/obo/OBI_0000626
Study Assay Technology Type Term Source REF	OBI
Study Assay Technology Platform	Illumina
STUDY PROTOCOLS
{% set cellculture_meta = cookiecutter.cellculture_meta.split(",") -%}
{% set sample_meta = cookiecutter.sample_meta.split(",") -%}
{% set library_construction_meta = cookiecutter.library_construction_meta.split(",") -%}
{% set sequencing_meta = cookiecutter.sequencing_meta.split(",") -%}
Study Protocol Name	OverallQC	Cell culture	Differentiation	Sample collection	RNA extraction	Library construction	Nucleic acid sequencing
Study Protocol Type	OverallQC	Cell culture	Differentiation	Sample collection	RNA extraction	Library construction	Nucleic acid sequencing
Study Protocol Type Term Accession Number	""	""	""	""	""	""	""
Study Protocol Type Term Source REF	""	""	""	""	""	""	""
Study Protocol Description	""	""	""	""	""	""	""
Study Protocol URI	""	""	""	""	""	""	""
Study Protocol Version	""	""	""	""	""	""	""
Study Protocol Parameters Name	Passed	Passage{% for meta in cellculture_meta %};{{meta}}{% endfor %}	Protocol numbers;Culture type;Differentiation dates;No. of passages;Well format;Day	SampleType;Collection reagent	Extraction kit;RNA amount (ng);Tapestation QC RIN	Library kit;Library type{% for meta in library_construction_meta -%};{{meta}}{% endfor %}	Sequencing run;Barcode kit;Barcode name{% for meta in sequencing_meta -%};{{meta}}{% endfor %}
Study Protocol Parameters Name Term Accession Number	""	"{% for meta in cellculture_meta %};{% endfor %}"	";;;;;"	";"	";;"	";{% for meta in library_construction_meta -%};{% endfor %}"	";;{% for meta in sequencing_meta -%};{% endfor %}"
Study Protocol Parameters Name Term Source REF	""	"{% for meta in cellculture_meta %};{% endfor %}"	";;;;;"	";"	";;"	";{% for meta in library_construction_meta -%};{% endfor %}"	";;{% for meta in sequencing_meta -%};{% endfor %}"
Study Protocol Components Name	""	""	""	""	""	""	""
Study Protocol Components Type	""	""	""	""	""	""	""
Study Protocol Components Type Term Accession Number	""	""	""	""	""	""	""
Study Protocol Components Type Term Source REF	""	""	""	""	""	""	""
STUDY CONTACTS
Study Person Last Name
Study Person First Name
Study Person Mid Initials
Study Person Email
Study Person Phone
Study Person Fax
Study Person Address
Study Person Affiliation
Study Person Roles
Study Person Roles Term Accession Number
Study Person Roles Term Source REF
